PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 890210
Common NameARALYDRAFT_890210
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family ERF
Protein Properties Length: 306aa    MW: 33775.8 Da    PI: 7.01
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
890210genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.72.5e-1757106255
     AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
             +y+GVr+++ +gr++AeIrdp     +  r +lg+f+taeeAa a++ a+++++g
  890210  57 RYRGVRRRP-WGRYAAEIRDPL----SkERRWLGTFDTAEEAACAYDCAARAMRG 106
             59*******.**********73....35999**********************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.35E-2157114IPR016177DNA-binding domain
PROSITE profilePS5103221.91857114IPR001471AP2/ERF domain
PfamPF008479.5E-1157106IPR001471AP2/ERF domain
CDDcd000182.40E-3057113No hitNo description
Gene3DG3DSA:3.30.730.103.3E-2957113IPR001471AP2/ERF domain
SMARTSM003809.9E-3357120IPR001471AP2/ERF domain
PRINTSPR003671.5E-95869IPR001471AP2/ERF domain
PRINTSPR003671.5E-98096IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0009880Biological Processembryonic pattern specification
GO:0048825Biological Processcotyledon development
GO:0051726Biological Processregulation of cell cycle
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MEEAIMRLEG AEHRETNNHS LKRKPSRPSL TAPGSPGGVT TAKAASGAGA SGGSTIRYRG  60
VRRRPWGRYA AEIRDPLSKE RRWLGTFDTA EEAACAYDCA ARAMRGLKAR TNFVYPMPSL  120
DSYHHRIFSS PPMNMFLLRD VLNSQSLSPL TTFAYPPCNL PNVNDVVHES FTNVNDVSED  180
LSPKAKRSST IENESLISNI FEPEPAGSGL LQEIVQGFLP KPISQHDSIA PKSNQPSVGV  240
FPTMPETGFQ TNVRLPDFNV EGNGFGQVKY HGELGWADHE REFDSAKMQQ NGNGGMFYQY  300
CFHDY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-1658113662ATERF1
3gcc_A1e-1658113662ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0001030.0AC000103.2 Genomic sequence for Arabidopsis thaliana BAC F21J9 from chromosome I, complete sequence.
GenBankAY5608890.0AY560889.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At1g24590) mRNA, complete cds.
GenBankBT0260730.0BT026073.1 Arabidopsis thaliana At1g24590 mRNA, complete cds.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002890702.10.0hypothetical protein ARALYDRAFT_890210
SwissprotQ9FYK50.0ESR2_ARATH; Ethylene-responsive transcription factor ESR2
TrEMBLD7KAL30.0D7KAL3_ARALL; Putative uncharacterized protein
STRINGscaffold_103004.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM73552541
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24590.11e-176DORNROSCHEN-like